All right I have a d16z6 head on a d15b7 block.. it ran fine when I first did the swap until my valve guides took a crap... so $600 later everything is back together and it still won't run..

This is what happens..
After sitting for a while it will start and run fine for about 2 minutes then starts to bog down,shake and sputter then eventually dies... trying to start it again you have to hold the pedal to the floor then it'll fire but run like crap until it dies...

What I have done...
I replaced the cap,rotor,plugs,changed injectors,checked fuel filter,fuel pressure regulator,used sea foam,double checked timing...

It almost acts like its either flooding or not getting enough gas

I'm completely lost and its been 2+ weeks now

Remove the ignitor and coil and have AutoZone test them for free.

I tried.. they said they couldn't test it... wich is the ignitor?

The ignitor is the Ignition Control Module (ICM). Here's what it looks like and costs:

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I would just replace it, along with the coil, since they are problematic components on Hondas.