I have completed my engineering (B. Tech.) in biotechnology in 2011 and currently preparing for master's in M. Tech. And M. Sc. (for entrance exams going to be conducted in 2012). But, I'm confused between which master's course I need to purse in future. The reason behind is that as far as I have searched for the job opportunities in RnD in India, everywhere employers try to seek for M. Sc. Students and a there is a little scope for M. Tech. Guys. So, which master's course would be really better to purse in my case for a better career in future.

Your help/advice would be really appreciated and thank you in advance.

I would recommend MSc. But it also depends on which part of India do you live in.