You need to determine which was his state of domicile - that is, which was his primary residence? You can't have two primary residences, so you need to review his finances to see which he considered his primary residence while the other was considered a second home. In general his domicile is the residence he spent the most time at each year, but it can also depend on such things as which state was his drivers license and car registrations issued by, and where did he vote. I would guess, knowing nothing else, that he may have claimed FL as his domicile in order to avoid paying income tax to GA, but that's just a guess.
Once you have his domicile figured out that determines which state is where you probate the estate. In that state you go through probate for ALL of his assets, including all out-of-state property. Note however that even if the estate is probated in FL, depending on the value of the property in GA there may be a requirement to file and/or pay an estate tax return in GA.
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