I've seen anime movie in my youth. I would like to see it again, but I don't remember the title. I saw it in 1996 or something like that.
Description: hero rides a motorcycle in space, and fights evil. I remember that he fought main villain in the end. Villain was semi-transparent.

Sounds like,.

Space Adventure Cobra

-view- (http://www.youtube.com/watch?v=9r46ZMArjQ0)
☺
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Straydog, thank you very much :)
It's just unbelievable that someone could recognize it from my ty description! Anyway you are absolutely right and helped me a lot.

Wish you best of luck man :)