I am having trouble wiring a programmable thermostat with a Goodman Gas Pack/Air Conditioning Unit current wiring I have is:

Red = R
Green = G
Yellow = Y1
White = W2
Orange = B/O/W1
Blue = C

How do I transfer these to the Hunter 44360

I know Red is 24 v
Green is fan
what are the other wires so that I can transfer to the thermostat.

You will not be using that thermostat I believe. From the terminals above you have a heat pump style unit that has 2 stages of heat. One is the heat pump Orange and the other is White.

See page 6 of the manual. I know you already read the one that came with the thermostat but read page 6 below where it says it will not work with your unit.

This is the good part you missed.

This thermostat is not designed for multi-stage heat pump systems or 110/220 V baseboard heating systems.


http://www.hunterfan.com/uploadedFiles/Support/Owner_Manuals/44360.pdf

I am having trouble wiring a programmable thermostat with a Goodman Gas Pack/Air Conditioning Unit current wiring I have is:

Red = R
Green = G
Yellow = Y1
White = W2
Orange = B/O/W1
Blue = C

How do I transfer these to the Hunter 44360

I know Red is 24 v
Green is fan
what are the other wires so that I can transfer to the thermostat.

Y1 is call for cool
W1 is call for heat
O/B is not used with gas heat

Punt the Hunter. Even if it was the correct model for your system, they are very unreliable.